A spokesman said they have been working with Lincolnshire Fire & Rescue, Highways and the Environment Agency as reports were received about roads and homes flooding.
The statement says: "We put signs to close Harrington Road, and the actual closure was put in place by Highways.
"We also received a call at 12.21pm, reporting flooding on the A158 at Hagworthingham.
"There have been around 65 incident so far. We have worked with Fire & Rescue, Highways and the Environment Agency, closing roads where required and providing assistance to anyone at risk.
"We would also advise drivers to keep a check on our article about road disruptions: to take care when travelling and drive to the conditions."